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Table 3 Results of Gene Set Variation Analysis (GSVA) and single-sample GSEA (ssGSEA)

From: Deciphering genes associated with diffuse large B-cell lymphoma with lymphomatous effusions: A mutational accumulation scoring approach

 

GSVA

ssGSEA

Signaling pathway

E(+)1

E(+)2

E(-)1

E(-)2

E(+)1

E(+)2

E(-)1

E(-)2

MAPK

0.158

0.312

-0.236

-0.244

0.175

0.170

0.061

0.059

Toll-like receptor

0.160

0.168

-0.142

-0.177

0.170

0.177

0.113

0.116

JAK/STAT

0.359

0.208

-0.014

-0.498

0.083

0.076

-0.043

-0.059

  1. Both GSVA and ssGSEA were implemented using “GSVA” package in R