From: Epigenetic based synthetic lethal strategies in human cancers
Pathway | gene | tumor type | methylation frequency | refs |
---|---|---|---|---|
DDR | BRCA1 | pancreatic | 46% | [149] |
 | NSCLC | 30% | [129] | |
 | ESCC | 28% | [110] | |
 | ovarian | 16.3% | [150] | |
BRCA2 | NSCLC | 42% | [129] | |
MGMT | gliomas | 40% | [130] | |
 | NSCLC | 30% | [142] | |
 | gastric | 9.8% | [122] | |
MLH1 | CRC | 38% | [151] | |
 | ESCC | 33% | [110] | |
 | gastric | 21.6% | [122] | |
MSH2 | HPNCC | 24% | [152] | |
 | HCC | 24.6% | [153] | |
WRN | CRC | 37.9% | [118] | |
 | NSCLC | 37.5% | [118] | |
 | gastric | 25% | [118] | |
 | prostate | 20% | [118] | |
FANCF | cervical | 30% | [154] | |
 | ovarian | 21% | [154] | |
 | breast | 17% | [154] | |
DDR related | P16 | ESCC | 52% | [110] |
 | NSCLC | 29% | [142] | |
CHFR | ESCC | 45% | [141] | |
 | gastric | 34.3% | [122] | |
 | NSCLC | 10% | [142] | |
RASSF1A | gliomas | 79.4% | [155] | |
 | cholangiocarcinoma | 65% | [156] | |
 | gastric | 12.7% | [122] | |
SLFN11 | CRC | 55.47% | [120] | |
 | papillary serous ovarian | 39% | [119] | |
 | gastric | 29.9% | [121] | |
 | NSCLCs. | 13.6% | [119] | |
DACT2 | ESCC | 69% | [145] | |
 | gastric | 55.7% | [157] | |
 | breast | 49.7% | [146] | |
 | lung | 41% | [144] | |
NKD2 | ESCC | 53.2% | [148] | |
 | gastric | 53.1% | [158] | |
 | breast | 51.4% | [159] | |
HIN-1 | ESCC | 50% | [160] | |
 | NSCLC | 48% | [161] | |
DACH1 | gastric | 63.3% | [162] | |
 | ESCC | 61.5% | [163] | |
 | HCC | 42% | [164] |