Skip to main content

Table 2 Allele-specificity of HLA-DQA1 probe sets

From: The use of haplotype-specific transcripts improves sample annotation consistency

Gene HLA-DQA1
Probe set 203290_at 213831_at
Probe 1 2 3 4 5 6 7 8 9 10 11 1 2 3 4 5 6 7 8 9 10 11
Allele (predicted)                       
HLA-DQA1*0101.1 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 0 0 1 1 1 1
HLA-DQA1*0102 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 1 0 0 0 1
HLA-DQA1*0103 0 0 0 0 0 1 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1
HLA-DQA1*0201 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
HLA-DQA1*0301.1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
HLA-DQA1*0401 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
HLA-DQA1*0501 1 1 1 0 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
  1. The nucleotide sequence of 203290_at perfectly matches the *0401 allele, and contains at least one mismatched probe for other alleles while 213831_at perfectly matches the *0103 allele, and contains at least one mismatched probe for other alleles. Perfect matches are indicated as an italicized bold 1. Allele sequences from [12].