Table 4 List of comprehensive metabolomic databases
From: Metabolomic analyses for atherosclerosis, diabetes, and obesity
Link of the databases | Teams or specificity | Numbers of metabolites | Data included |
|---|---|---|---|
BIGG ( http://bigg.ucsd.edu) | A metabolic reconstruction of human metabolism | 1,496 ORFs*1, 2,004 proteins, 2,766 metabolites, and 3,331 metabolic and transport reactions | Literature-based genome-scale metabolic reconstruction |
BinBase ( http://bigg.ucsd.edu/) | A GC-TOF*2 metabolomic database | Unknown | Metabolomic database |
HMDB ( http://www.hmdb.ca) | Human Metabolome Database; | More than 6,500; | Chemical data; Clinical data; Molecular Biology/Biochemistry data |
Small molecule metabolites | Link to ~ 1,500 protein and DNA sequences | ||
SetupX ( http://bigg.ucsd.edu/; http://fiehnlab.ucdavis.edu:8080/m1/readme.jsp) | A web-based metabolomics LIMS*3 | unknown | Display of GC-MS*4 metabolomic data |
SMPDB ( http://www.smpdb.ca/) | The small molecule pathway database | More than 350 small molecule pathways | Human metabolic pathways, metabolic disease pathways, metabolite signaling pathways and drug-action pathways |
SYSTOMONAS ( http://fiehnlab.ucdavis.edu:8080/m1/login.jsp) | Systems biology of pseudomonas--systems biology studies of Pseudomonas species. | Extensive | Transcriptomics, proteomic, metabolomic and metabolic reconstructions |