Table 2 List of drug metabolic databases
From: Metabolomic analyses for atherosclerosis, diabetes, and obesity
Link of the databases | Teams or specificity | Numbers of metabolites | Data included |
|---|---|---|---|
DrugBank ( http://www.drugbank.ca/) | A blended bioinformatics and cheminformatics database of drugs and their targets | ~4,800 drug entries (>1,350 FDA*1-approved small molecule drugs, 123 biotech drugs, 71 nutraceuticals and >3,243 experimental drugs. | Chemical, pharmacological and pharmaceutical data; sequence, structure, and pathway information |
PharrmGKB ( http://www.pharmgkb.org/) | A central repository for genetic, genomic, molecular and cellular phenotype data and clinical information of people who have participated in pharmacogenomics research study | >20,000 genes; | Data of clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains |
>3,000 diseases; | |||
>2,500 drugs; | |||
~ 53 pathways | |||
~470 genetic variants affecting drug metabolism | |||
STITCH ( http://stitch.embl.de/) | Search tool for interactions of chemicals | More than 68,000 different chemicals including 2,200 drugs, and connects them to 1.5 million genes across 373 genomes | Information about interaction of metabolic pathways, crystal structures, binding experiments and drug-target relationships |
SuperTarget ( http://insilico.charite.de/supertarget) | A core dataset of drug-target relations | ~7,300 relations to 1,500 drugs | Drug-target relations; tools for 2D*2 drug screening and sequence comparison of the targets |
Therapeutic Target DB ( http://xin.cz3.nus.edu.sg/group/ttd/ttd.asp) | A therapeutic target database | 1,535 targets and 2,107 drugs/ligands | Information about the known therapeutic protein and nucleic acid targets; the targeted disease conditions; the pathway information; and drug/ligands of targets |