Table 1 List of compound and disease/physiology databases
From: Metabolomic analyses for atherosclerosis, diabetes, and obesity
Link of the databases | Teams or specificity | Numbers of metabolites | Data included |
|---|---|---|---|
ChEBI ( http://www.ebi.ac.UK/chebi/) | Chemical Entities of Biological Interest; Small chemical compounds | More than 15,500 chemical entities | Structure and nomenclature information |
ChemSpider ( http://www.chemspider.com/) | An aggregated database of organic molecules | More than 20 million compounds | Search utilities and a large number of calculated physicochemical property values. |
KEGG Glycan ( http://www.genome.jp/kegg/glycan/) | A collection of experimentally determined glycan structures | More than 11,000 glycan structures from a large number of eukaryotic and prokaryotic | Glycan structures |
METAGENE ( http://www.metagene.de/) | A knowledgebase for inborn errors of metabolism | 431 genetic diseases | Information about the disease, genetic cause, treatment and the characteristic metabolite concentrations or clinical test used for the diagnosis of disease |
Online Mendelian Inheritance in Man: a comprehensive compendium of human genes and genetic phenotypes | Contain information on all known Mendelian disorders and over 12,000 genes | The relationship between phenotype and genotype | |
OMMBID ( http://www.ommbid.com/) | An web-accessible book/encyclopedia describing the genetics, metabolism, diagnosis and treatment of metabolic disorders | Hundreds of metabolic disorders | Extensive reviews, detailed pathways, chemical structures, physiological data and tables |
PubChem ( http://pubchem.ncbi.nlm.nih.gov/) | Structures and activities of small organic molecules | More than 19 millions | Structure, nomenclature physic-chemical data |