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Table 2 The parameters and the settings in Gene Set Enrich Analysis (GSEA)

From: Deciphering genes associated with diffuse large B-cell lymphoma with lymphomatous effusions: A mutational accumulation scoring approach

Chip Platform Human_Gene_Symbol_with_Remapping_MSigDB.v7.4.chip
Gene sets database C2.cp.kegg.v7.4.symbols.gmt [Curated]
Number of permutations 1000
Permutation type gene_set
Enrichment statistics Weighted
Metric for ranking genes Signal2Noise
Min size (exclude smaller sets) 15
Max size (exclude larger sets) 500
Collapsing mode for probe sets \(\ge 1\) gene Max_probe
Normalize mode meandiv