Skip to main content

Table 1 Predicted effects of −51 mutation in intron 8

From: Clinical significance of intronic variants in BRAF inhibitor resistant melanomas with altered BRAF transcript splicing

 

Branch Site

Donor Splice

SRSF6

 

Position/Site/Score

Position/Site/Score

Sequence/Site/Score

Wild Type

-51/CTCTGAT/88

-54/ACTctcgat/40

-134/TGTGTA/84

Mutant

-51/GTCTGAT/86

-138/ACTgtctga/67

-134/TGTGTA/84

  1. Data derived using the Human Splice Finder Tool [12]
  2. Branch Site score above 67 is considered a potential break point, and score variation between wild type and mutant sequence of less than −10% is considered to break the branch point
  3. Splice Site values above 65 are predicted splice sites, the −51 G mutation is underlined in Cryptic Donor Site
  4. Splicing factor SRSF6 motif with highest predicted scores is shown [12]
  5. Motif position is relative to first nucleotide of exon 9