Table 4 Summary of the score tests
From: The use of haplotype-specific transcripts improves sample annotation consistency
Dataset ID | Tissue | Number of samples | Number of donors with repeat measures | Flagged samples | Reason for suspicion | Fail after inspection (not resolvable) | Decision | ||
|---|---|---|---|---|---|---|---|---|---|
REDKX- gender QC fail | Score differences (intra-donor) | ||||||||
N° samples | N° samples | N° samples | |||||||
GSE6751 | PBMC | 59 | 15 | 5 | 3 | 5 | 4 | Follow-up | |
GSE6281 | Skin | 33 | 11 | 0 | 0 | 0 | 0 | NA | |
GSE20489 | Whole blood | 54 | 11 | 1 | 0 | 1 | 1 | Follow-up | |
GSE24206 | Lung | 12 | 6 | 0 | 0 | 0 | 0 | NA | |
GSE32473 | Skin | 30 | 10 | 0 | 0 | 0 | 0 | NA | |
Summary | 5 datasets | 4 tissues | 188 | 53 | 6 | 3 | 6 | 5 | |