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Table 4 Summary of the score tests

From: The use of haplotype-specific transcripts improves sample annotation consistency

  Dataset ID Tissue Number of samples Number of donors with repeat measures Flagged samples Reason for suspicion Fail after inspection (not resolvable) Decision
       REDKX- gender QC fail Score differences (intra-donor)   
       N° samples N° samples N° samples  
  GSE6751 PBMC 59 15 5 3 5 4 Follow-up
  GSE6281 Skin 33 11 0 0 0 0 NA
  GSE20489 Whole blood 54 11 1 0 1 1 Follow-up
  GSE24206 Lung 12 6 0 0 0 0 NA
  GSE32473 Skin 30 10 0 0 0 0 NA
Summary 5 datasets 4 tissues 188 53 6 3 6 5  
  1. The candidate markers were applied to datasets from the public domain (http://www.ncbi.nlm.nih.gov/geo). About 3% of samples have annotation issues which could not be resolved by visual inspection of the intensity data alone. The individual REDKX marker intensity values are not shown. Individual results are shown in Additional file 1: Table S1.