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Table 1 Result of Hartigans’ dip test

From: The use of haplotype-specific transcripts improves sample annotation consistency

Probeset ID Gene symbol Entrez gene ID Cytoband Dip statistic Empirical p-value
205000_at DDX3Y 8653 Yq11 0.147 <1.00E-06
203290_at HLA-DQA1 3117 6p21.3 0.147 <1.00E-06
228492_at USP9Y 8287 Yq11.2 0.143 <1.00E-06
232618_at TXLNG2P 246126 Yq11.222 0.140 <1.00E-06
201909_at RPS4Y1 6192 Yp11.3 0.139 <1.00E-06
209728_at HLA-DRB4 3126 6p21.3 0.137 <1.00E-06
223646_s_at TXLNG2P 246126 Yq11.222 0.133 <1.00E-06
224588_at XIST 7503 Xq13.2 0.131 <1.00E-06
206700_s_at KDM5D 8284 Yq11 0.130 <1.00E-06
204409_s_at EIF1AY 9086 Yq11.223 0.124 <1.00E-06
205001_s_at DDX3Y 8653 Yq11 0.123 <1.00E-06
214218_s_at XIST 7503 Xq13.2 0.121 <1.00E-06
227671_at XIST 7503 Xq13.2 0.120 <1.00E-06
224590_at XIST 7503 Xq13.2 0.118 <1.00E-06
231592_at TSIX 9383 Xq13.2 0.117 <1.00E-06
221728_x_at XIST 7503 Xq13.2 0.116 <1.00E-06
211149_at UTY 7404 Yq11 0.113 <1.00E-06
226736_at CHURC1 91612 14q23.3 0.108 <1.00E-06
235446_at --- --- --- 0.107 <1.00E-06
1560263_at --- --- --- 0.103 2.00E-06
223645_s_at TXLNG2P 246126 Yq11.222 0.099 6.00E-06
208067_x_at UTY 7404 Yq11 0.096 1.00E-05
230760_at ZFY 7544 Yp11.3 0.093 1.60E-05
204410_at EIF1AY 9086 Yq11.223 0.093 1.80E-05
224589_at XIST 7503 Xq13.2 0.092 2.90E-05
205048_s_at PSPH 5723 7p11.2 0.090 4.00E-05
214131_at TXLNG2P 246126 Yq11.222 0.089 4.70E-05
207805_s_at PSMD9 5715 12q24.31 0.089 5.60E-05
238900_at HLA-DRB1 3123 6p21.3 0.088 6.70E-05
1559003_a_at CCDC163P 126661 1p34.1 0.088 7.10E-05
208909_at UQCRFS1 7386 19q12 0.086 0.000112
215333_x_at GSTM1 2944 1p13.3 0.085 0.000158
208919_s_at NADK 65220 1p36.33 0.085 0.000163
241808_at ZC2HC1A 51101 8q21.12 0.082 0.000287
225318_at --- --- --- 0.081 0.000345
212262_at QKI 9444 6q26 0.081 0.000379
225236_at RBM18 92400 9q33.2 0.081 0.000434
206279_at PRKY 5616 Yp11.2 0.080 0.000554
1554094_at ENTPD5 957 14q24 0.080 0.000554
203280_at SAFB2 9667 19p13.3 0.080 0.000574
226990_at CAPRIN1 4076 11p13 0.079 0.000628
203056_s_at PRDM2 7799 1p36.21 0.079 0.000726
241033_at --- --- --- 0.078 0.000844
205173_x_at CD58 965 1p13 0.078 0.000872
235104_at ERAP2 64167 5q15 0.078 0.000882
  1. The table shows probe sets with an empirical p-value < 0.001, sorted by descending dip test statistics. About 47% of the genes in the list are located on heterosomes, among those all genes of the gender marker “REDKX” ([6], italicized for visualization purposes). Probe sets for HLA-genes, which were further considered during the marker validation process, are highlighted in bold.