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Table 1 Result of Hartigans’ dip test

From: The use of haplotype-specific transcripts improves sample annotation consistency

Probeset ID

Gene symbol

Entrez gene ID

Cytoband

Dip statistic

Empirical p-value

205000_at

DDX3Y

8653

Yq11

0.147

<1.00E-06

203290_at

HLA-DQA1

3117

6p21.3

0.147

<1.00E-06

228492_at

USP9Y

8287

Yq11.2

0.143

<1.00E-06

232618_at

TXLNG2P

246126

Yq11.222

0.140

<1.00E-06

201909_at

RPS4Y1

6192

Yp11.3

0.139

<1.00E-06

209728_at

HLA-DRB4

3126

6p21.3

0.137

<1.00E-06

223646_s_at

TXLNG2P

246126

Yq11.222

0.133

<1.00E-06

224588_at

XIST

7503

Xq13.2

0.131

<1.00E-06

206700_s_at

KDM5D

8284

Yq11

0.130

<1.00E-06

204409_s_at

EIF1AY

9086

Yq11.223

0.124

<1.00E-06

205001_s_at

DDX3Y

8653

Yq11

0.123

<1.00E-06

214218_s_at

XIST

7503

Xq13.2

0.121

<1.00E-06

227671_at

XIST

7503

Xq13.2

0.120

<1.00E-06

224590_at

XIST

7503

Xq13.2

0.118

<1.00E-06

231592_at

TSIX

9383

Xq13.2

0.117

<1.00E-06

221728_x_at

XIST

7503

Xq13.2

0.116

<1.00E-06

211149_at

UTY

7404

Yq11

0.113

<1.00E-06

226736_at

CHURC1

91612

14q23.3

0.108

<1.00E-06

235446_at

---

---

---

0.107

<1.00E-06

1560263_at

---

---

---

0.103

2.00E-06

223645_s_at

TXLNG2P

246126

Yq11.222

0.099

6.00E-06

208067_x_at

UTY

7404

Yq11

0.096

1.00E-05

230760_at

ZFY

7544

Yp11.3

0.093

1.60E-05

204410_at

EIF1AY

9086

Yq11.223

0.093

1.80E-05

224589_at

XIST

7503

Xq13.2

0.092

2.90E-05

205048_s_at

PSPH

5723

7p11.2

0.090

4.00E-05

214131_at

TXLNG2P

246126

Yq11.222

0.089

4.70E-05

207805_s_at

PSMD9

5715

12q24.31

0.089

5.60E-05

238900_at

HLA-DRB1

3123

6p21.3

0.088

6.70E-05

1559003_a_at

CCDC163P

126661

1p34.1

0.088

7.10E-05

208909_at

UQCRFS1

7386

19q12

0.086

0.000112

215333_x_at

GSTM1

2944

1p13.3

0.085

0.000158

208919_s_at

NADK

65220

1p36.33

0.085

0.000163

241808_at

ZC2HC1A

51101

8q21.12

0.082

0.000287

225318_at

---

---

---

0.081

0.000345

212262_at

QKI

9444

6q26

0.081

0.000379

225236_at

RBM18

92400

9q33.2

0.081

0.000434

206279_at

PRKY

5616

Yp11.2

0.080

0.000554

1554094_at

ENTPD5

957

14q24

0.080

0.000554

203280_at

SAFB2

9667

19p13.3

0.080

0.000574

226990_at

CAPRIN1

4076

11p13

0.079

0.000628

203056_s_at

PRDM2

7799

1p36.21

0.079

0.000726

241033_at

---

---

---

0.078

0.000844

205173_x_at

CD58

965

1p13

0.078

0.000872

235104_at

ERAP2

64167

5q15

0.078

0.000882

  1. The table shows probe sets with an empirical p-value < 0.001, sorted by descending dip test statistics. About 47% of the genes in the list are located on heterosomes, among those all genes of the gender marker “REDKX” ([6], italicized for visualization purposes). Probe sets for HLA-genes, which were further considered during the marker validation process, are highlighted in bold.
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Biomarker Research

ISSN: 2050-7771

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